@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 180 atoms and 1 coordinate set(s) were parsed in 0.01s.
Visualizations and results¶
Original Structure Visualization¶
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@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 180 atoms and 1 coordinate set(s) were parsed in 0.01s.
6vw2A_TEMP Blue:2kb8A Red:6vw2A
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AlphaFold predictions¶
Best AF prediction to fold 1¶
@> 272 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
Blue:ShallowMsa_001_unrelaxed_rank_002_alphafold2_ptm_model_2_seed_000 Red:2kb8A
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Best AF prediction to fold 2¶
No max_af_pdb2
EsmFold Prediction¶
Best EsmFold prediction to fold 1¶
@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 261 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 261 atoms and 1 coordinate set(s) were parsed in 0.01s.
reference and target coordinate arrays must have same number of atoms ShallowMsa_009_2_TEMP Blue:2kb8A Red:ShallowMsa_009_2
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Best EsmFold prediction to fold 2¶
single positional indexer is out-of-bounds name 'pdb_file2_' is not defined
Contact maps Msa Transformers¶
No max_f1Score_pdb1 No max_f1Score_pdb2 No max_precision_pdb1 No max_precision_pdb2 No max_recall_pdb1 No max_recall_pdb2
No max_f1Score_pdb1 No max_f1Score_pdb2 No cmap_pred_precision_1 No cmap_pred_precision_2 No cmap_pred_recall_1 No cmap_pred_recall_2
No plot for f1Score_1 No plot for f1Score_2
No precision_1 No precision_2
No recall_1 No recall_2
