@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 180 atoms and 1 coordinate set(s) were parsed in 0.01s.

Visualizations and results¶

Original Structure Visualization¶

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@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 180 atoms and 1 coordinate set(s) were parsed in 0.01s.
6vw2A_TEMP
Blue:2kb8A
Red:6vw2A

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AlphaFold predictions¶

Best AF prediction to fold 1¶

@> 272 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
Blue:ShallowMsa_001_unrelaxed_rank_002_alphafold2_ptm_model_2_seed_000
Red:2kb8A

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Best AF prediction to fold 2¶

No max_af_pdb2

EsmFold Prediction¶

Best EsmFold prediction to fold 1¶

@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 261 atoms and 1 coordinate set(s) were parsed in 0.01s.
@> 535 atoms and 30 coordinate set(s) were parsed in 0.13s.
@> 261 atoms and 1 coordinate set(s) were parsed in 0.01s.
reference and target coordinate arrays must have same number of atoms
ShallowMsa_009_2_TEMP
Blue:2kb8A
Red:ShallowMsa_009_2

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Best EsmFold prediction to fold 2¶

single positional indexer is out-of-bounds
name 'pdb_file2_' is not defined

Contact maps Msa Transformers¶

No max_f1Score_pdb1
No max_f1Score_pdb2
No max_precision_pdb1
No max_precision_pdb2
No max_recall_pdb1
No max_recall_pdb2
No max_f1Score_pdb1
No max_f1Score_pdb2
No cmap_pred_precision_1
No cmap_pred_precision_2
No cmap_pred_recall_1
No cmap_pred_recall_2
No plot for f1Score_1
No plot for f1Score_2
No description has been provided for this image
No precision_1
No precision_2
No description has been provided for this image
No recall_1
No recall_2
No description has been provided for this image